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List of Publications
  1. Almas Jabeen, Nadeem Ahmad & Khalid Raza, "Machine learning-based state-of-the-art methods for the classification of RNA-Seq data", In: Dey N., Ashour A., Borra S. (eds) Classification in BioApps. Lecture Notes in Computational Vision and Biomechanics, Springer, vol. 26, pp. 133-172, 2018. DOI: 10.1007/978-3-319-65981-7_6 | Download

  2. Nisar Wani, & Khalid Raza, "Multiple Kernel Learning approach for medical image analysis", In: Dey N, Ashour A, Shi F, Balas E (eds), Soft Computing Based Medical Image Analysis, Elsevier, pp. 31-47, 2018. DOI: 10.1016/B978-0-12-813087-2.00002-6 | Download

  3. F.N. Khan, S. Qazi, K. Tanveer & K. Raza, "A review on the antagonist Ebola: A prophylactic approach", Biomedicine & Pharmacotherapy, Elsevier, vol. 96, pp. 1513-1526, 2017. DOI: 10.1016/j.biopha.2017.11.103 | (IF 2.96) Download

  4. Khalid Raza, "Protein features identification for machine learning-based prediction of protein-protein interactions", In Communications in Computer and Information Science, Springer, vol. 750, pp. 305-317, 2017. DOI: 10.1007/978-981-10-6544-6_28 | Download

  5. Khalid Raza, & Sabahuddin Ahmad, "Recent advancement in next-generation sequencing techniques and its computational analysis", International Journal of Bioinformatics Research and Applications, Inderscience (In Press). DOI: N/A | (IF 0.54) Download

  6. Khalid Raza, "Formal concept analysis for knowledge discovery from biological data", International Journal of Data Mining and Bioinformatics, Inderscience, vol. 18, issue 4, pp. 281-300, 2017. DOI: 10.1504/IJDMB.2017.10009312 | (IF 0.68) Download

  7. Khalid Raza, and Mansaf Alam, "Recurrent Neural Network Based Hybrid Model for Reconstructing Gene Regulatory Network", Computational Biology and Chemistry, Elsevier, vol. 64, pp. 322-334, 2016. DOI: 10.1016/j.compbiolchem.2016.08.002 | (IF 1.16) Download

  8. Khalid Raza, "Reconstruction, Topological and Gene Ontology Enrichment Analysis of Cancerous Gene Regulatory Network Modules", Current Bioinformatics, Vol. 11, No. 2, pp. 243-258, 2016. DOI: 10.2174/1574893611666160115212806 | (IF 1.73) Download

  9. Nisar Wani and Khalid Raza, "Precision Medicine: Towards Genomics Driven Healthcare", CSI Communications, Vol. 40, No. 7, pp. 7-11, 2016. Download

  10. Khalid Raza, "Analysis of Microarray Data Using Artificial Intelligence Based Techniques", Handbook of Research on Computational Intelligence Applications in Bioinformatics, IGI Global, USA, pp. 216-239, 2016. DOI: 10.4018/978-1-5225-0427-6.ch011 | Download

  11. Khalid Raza, "M5 Model Tree and Gene Expression Programming for the Prediction of Metrological Parameters" , Proc. of 2015 International Conference on Computers, Communications, and Systems (ICCCS-2015), Nov 2-3, 2015, Kanyakumari, India, p. 47-51, IEEE. DOI: 10.1109/CCOMS.2015.7562850 | Download

  12. Khalid Raza and Atif N Hasan, "A Comprehensive Evaluation of Machine Learning Techniques for Cancer Class Prediction Based on Microarray Data", International Journal of Bioinformatics Research and Applications, Vol. 11, No. 5, pp. 397-416, 2015. DOI: 10.1504/IJBRA.2015.071940 | (Scopus IF 0.54) Download

  13. Khalid Raza and Mahish Kohli, "Ant Colony Optimization for Inferring Key Gene Interactions", Proc. of 9th INDIACom-2015, 2nd International Conference on Computing for Sustainable Global Development, March 11-13, 2015 pp. 8.40-8.44 (IEEE Xplore). [arXiv] Download

  14. Khalid Raza, "Network biology: A new way to understand complex disease and future of medicine", CSI Communications, Vol. 38, No. 10, pp. 16-18, 2015. Download

  15. Khalid Raza, and V. Jothiprakash , "Multi-Output ANN Model for prediction of seven meteorological parameters in a weather station", Journal of The Institution of Engineers (India): Series A, Springer, Vol. 95, Issue 4, pp. 221-229, 2014. DOI: 10.1007/s40030-014-0092-9 | Download

  16. Khalid Raza, "Clustering analysis of cancerous microarray data", Journal of Chemical and Pharmaceutical Research, Vol. 6, Issue 9, pp. 488-493, 2014. (Scopus IF 0.90) Download

  17. Khalid Raza, "The Role of 'Web' in Education and Research", Professional Development: A Magazine for Young Professionals, Vol. 1, Issue 1, February, 2014.

  18. Sabahuddin Ahmad, Abuzar Hamza and Khalid Raza, "PREs-Clustered Motifs in Drosophila melanogaster", Res. J. Pharm., Biol. Chem. Sci., Vol. 4, Issue 4, pp. 1100-1110, 2013. (Scopus IF 0.35) Download

  19. Khalid Raza and Rafat Parveen, "Reconstruction of gene regulatory network of colon cancer using information theoretic approach", 4th INTERNATIONAL CONFERENCE, CONFLUENCE 2013, p. 9.06-9.06, DOI: 10.1049/cp.2013.2357 | [PDF] | [arXiv]

  20. Khalid Raza and Rajni Jaiswal, "Reconstruction and Analysis of Cancer-specific Gene Regulatory Networks from Gene Expression Profiles", International Journal on Bioinformatics & Biosciences, Vol. 3, No. 2, pp. 25-34, 2013. DOI: 10.5121/ijbb.2013.3203 | [arXiv] | Download

  21. Hiba Hasan and Khalid Raza, "Clustering Approach to Unveiling Relationships between Gene Regulatory Networks", International Journal of Computer Sciences, World Academy of Science, Engineering & Technology, Vol. 6, No. 5, 1307-1310, 2012. P-ISSN 2010-376X, E-ISSN 2010-3778 [Source]

  22. Khalid Raza and Akhilesh Mishra, "A Novel Anticlustering Filtering Algorithm for the Prediction of Genes as a Drug Target", American Journal of Biomedical Engineering, Vol. 2, No. 5, pp. 206-2011, 2012. DOI: 10.5923/j.ajbe.20120205.03 | [arXiv] Download

  23. Khalid Raza , V.K. Patle and Sandeep Arya, "A Review on Green Computing for Eco-friendly and Sustainable IT", J. Comput. Intell. Electron. Syst. Vol. 1, pp. 3-16, 2012. DOI: 10.1166/jcies.2012.1023 Download

  24. Khalid Raza and Rafat Parveen, "Soft Computing Approach for Modeling Genetic Regulatory Networks", Advances in Intelligent Systems and Computing, Vol. 178, pp 1-11, Springer-Verlag Berlin Heidelberg, 2012. DOI: 10.1007/978-3-642-31600-5_1 Download

  25. Khalid Raza and Rafat Parveen, "Evolutionary Algorithms in Genetic Regulatory Network Model", Journal of Advanced Bioinformatics Applications and Research, Vol. 1, No. 3, pp. 271-280, 2012, ISSN 0976-2604. [arXiv] Download (IF 1.057)

  26. Rashid Farooqi and Khalid Raza, "A Comprehensive Study of CRM through Data Mining Techniques", Proceedings of the National Conference; NCCIST-2011, pp. 61-65, 2011, ISBN 978-81-906991-3-6. [PDF] | [Source] | [arXiv]

  27. Khalid Raza, "Application of Data Mining in Bioinformatics", Indian Journal of Computer Science & Engineering (IJCSE), Vol 1, No 2, pp. 114-118, August 2010, ISSN : 0976-5166.
    [PDF] | [Source] | [arXiv]


List of Pre-Prints
  1. N. Wani & K. Raza, "Raw sequence to target gene prediction: An integrated inference pipeline for ChIP-seq and RNA-seq datasets", bioRxiv 220152 (Under Review)

  2. M. Faiza, K. Tanveer, S. Fatihi, Y. Wang & K. Raza, "Comprehensive overview and assessment of miRNA target prediction tools in human and drosophila melanogaster", arXiv preprint arXiv:1711.01632 (Under Review)

  3. A. Manazir & K. Raza, "Recent Developments in Cartesian Genetic Programming and its variants" (Under Review)

  4. K. Raza, "Improving the prediction accuracy of heart disease with ensemble learning and majority voting rule" (Under Review)

  5. K. Raza, "GRNIP: A Java Package for Inferring Gene Regulatory Networks from Gene Expression Profiles" (Under Review)

  6. S. Kumar, S. Ahmad, M.I. Siddiqi & K. Raza, "Mathematical Model For Plant-Insect Interaction With Dynamic Response To PAD4-BIK1 Interaction And Effect Of BIK1 Inhibition" (Under Revision)

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